EnhancerDB
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  3. rs117616413[chr1:55426524]
Enhancers that have rs117616413[chr1:55426524]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55426360 55441461 enh371
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Neural Stem Cells (H9) Stomach
Transcript factors that have rs117616413[chr1:55426524]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55426206 55431252 ZNF274 GTRD no Cervix (HeLa-S3) 21325384
chr1 55426515 55426532 ZNF410 JASPAR yes 29010659
chr1 55426522 55426532 ESX1 JASPAR yes 29010660
chr1 55426522 55426532 EVX2 JASPAR yes 29010661
chr1 55426522 55426532 HOXA2 JASPAR yes 29010662
chr1 55426522 55426532 HOXB2 JASPAR yes 29010663
chr1 55426523 55426531 LMX1A JASPAR yes 29010664
chr1 55426523 55426531 LMX1B JASPAR yes 29010665
chr1 55426523 55426531 NKX6-1 JASPAR yes 29010666
chr1 55426523 55426531 NKX6-2 JASPAR yes 29010667
chr1 55426523 55426531 VAX1 JASPAR yes 29010668
chr1 55426523 55426531 VAX2 JASPAR yes 29010669
chr1 55426523 55426531 VSX1 JASPAR yes 29010670
chr1 55426523 55426531 VSX2 JASPAR yes 29010671
chr1 55426523 55426537 POU1F1 JASPAR yes 29010672
chr1 55426524 55426536 POU3F1 JASPAR yes 29010673
chr1 55426524 55426536 POU3F2 JASPAR yes 29010674
chr1 55426524 55426537 POU3F3 JASPAR yes 29010675
Genes associated with rs117616413[chr1:55426524], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More