EnhancerDB
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  3. rs117620424[chr12:53250522]
Enhancers that have rs117620424[chr12:53250522]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53249369 53285465 enh14733
Bone Marrow (K562) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs117620424[chr12:53250522]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53249545 53250865 ZNF143 GTRD no Epithelial (MCF-7) 21547313
chr12 53249564 53250563 ZNF143 GTRD no Epithelial (MCF-7) 21547314
chr12 53249656 53250528 ZNF143 GTRD no Epithelial (MCF-7) 21547315
chr12 53250373 53251408 ZNF274 GTRD no Bone Marrow (K562) 21547326
chr12 53250445 53253718 ZBTB33 GTRD no Lung (A549) 21547327
chr12 53250510 53250525 FOXA1 JASPAR yes 120955056
chr12 53250511 53250526 FOXP1 JASPAR yes 120955057
chr12 53250512 53250523 FOXP2 JASPAR yes 120955058
chr12 53250512 53250524 FOXC2 JASPAR yes 120955059
chr12 53250513 53250524 FOXB1 JASPAR yes 120955063
chr12 53250513 53250524 FOXC1 JASPAR yes 120955064
chr12 53250514 53250522 FOXO3 JASPAR yes 120955071
chr12 53250514 53250525 FOXA1 JASPAR yes 120955072
chr12 53250518 53250531 POU2F2 JASPAR yes 120955073
chr12 53250519 53250530 FOXB1 JASPAR yes 120955074
chr12 53250519 53250531 POU3F1 JASPAR yes 120955075
chr12 53250519 53250531 POU3F2 JASPAR yes 120955076
chr12 53250520 53250524 YY1 TRANSFAC yes 120955077
chr12 53250521 53250530 POU3F4 JASPAR yes 120955078
chr12 53250521 53250530 POU5F1B JASPAR yes 120955079
Genes associated with rs117620424[chr12:53250522], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More