EnhancerDB
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  3. rs117624405[chr17:59402201]
Enhancers that have rs117624405[chr17:59402201]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 59383635 59420035 enh17269
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs117624405[chr17:59402201]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 59402182 59402203 IRF1 JASPAR yes 55148598
chr17 59402183 59402204 IRF1 JASPAR yes 55148600
chr17 59402186 59402201 FOXP1 JASPAR yes 55148602
chr17 59402186 59402207 IRF1 JASPAR yes 55148603
chr17 59402189 59402210 IRF1 JASPAR yes 55148604
chr17 59402190 59402204 SPI1 JASPAR yes 55148605
chr17 59402190 59402211 IRF1 JASPAR yes 55148606
chr17 59402196 59402217 IRF1 JASPAR yes 55148607
Genes associated with rs117624405[chr17:59402201], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More