EnhancerDB
  1. Home
  2. SNP
  3. rs117828882[chr3:16109720]
Enhancers that have rs117828882[chr3:16109720]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 16088245 16123415 enh20381
Liver Astrocyte Colon (HCT116) Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Ovary Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs117828882[chr3:16109720]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 16109710 16109721 CDX2 JASPAR yes 697432
chr3 16109711 16109722 HOXA10 JASPAR yes 697433
chr3 16109711 16109722 HOXC11 JASPAR yes 697434
chr3 16109711 16109722 HOXC12 JASPAR yes 697435
chr3 16109711 16109722 HOXD12 JASPAR yes 697436
chr3 16109712 16109721 CDX1 JASPAR yes 697437
chr3 16109712 16109722 HOXA13 JASPAR yes 697438
chr3 16109712 16109722 HOXC10 JASPAR yes 697439
chr3 16109712 16109722 HOXD11 JASPAR yes 697440
chr3 16109716 16109722 TBP TRANSFAC yes 697441
Genes associated with rs117828882[chr3:16109720], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More