EnhancerDB
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  3. rs117939603[chr1:229272276]
Enhancers that have rs117939603[chr1:229272276]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229225622 229286295 enh12760
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Ovary Esophagus Liver Blood (T-cell) Blood (OCI-LY7) Stomach Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Pancreas Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs117939603[chr1:229272276]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229269674 229274777 ZNF274 GTRD no Liver (HepG2) 21390264
chr1 229270321 229274409 ZNF274 GTRD no Liver (HepG2) 21390273
chr1 229270398 229272460 ZNF274 GTRD no Liver (HepG2) 21390285
chr1 229270432 229272516 ZNF143 GTRD no Epithelial (MCF-7) 21390298
chr1 229270437 229272505 ZNF143 GTRD no Epithelial (MCF-7) 21390302
chr1 229270609 229272451 ZNF143 GTRD no Epithelial (MCF-7) 21390315
chr1 229271334 229272295 ZNF274 GTRD no Liver (HepG2) 21390356
chr1 229271395 229272278 ZNF143 GTRD no Epithelial (MCF-7) 21390358
chr1 229271412 229274512 AR GTRD no Prostate (PC-3) 21390361
chr1 229271444 229272464 ZNF274 GTRD no Liver (HepG2) 21390365
chr1 229271452 229273415 ZNF274 GTRD no Liver (HepG2) 21390366
chr1 229271453 229272660 ZNF274 GTRD no Liver (HepG2) 21390368
chr1 229271829 229272362 ZNF274 GTRD no Liver (HepG2) 21390378
chr1 229272267 229272279 GLI2 JASPAR yes 35965516
Genes associated with rs117939603[chr1:229272276], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More