EnhancerDB
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  3. rs118105471[chr12:52541880]
Enhancers that have rs118105471[chr12:52541880]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs118105471[chr12:52541880]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033122
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033123
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033124
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033125
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546373
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033126
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033127
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033128
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033129
chr12 52541195 52542449 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546410
chr12 52541195 52542449 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033199
chr12 52541195 52542449 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033200
chr12 52541222 52542932 ZBTB33 GTRD no Lung (A549) 108033207
chr12 52541222 52542932 ZBTB33 GTRD no Lung (A549) 108033208
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 21546417
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 108033217
chr12 52541299 52542654 P63 GTRD no Skin (Keratinocyte) 108033218
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 21546421
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 108033222
chr12 52541388 52542783 P63 GTRD no Skin (Keratinocyte) 108033223
chr12 52541680 52542284 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546424
chr12 52541680 52542284 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033225
chr12 52541855 52542119 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546425
chr12 52541861 52541881 RREB1 JASPAR yes 120921938
Genes associated with rs118105471[chr12:52541880], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 52416616 52453291 + NR4A1 ENSG00000123358.15 52416616 88589 Liver 0.303503 12076