EnhancerDB
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  3. rs11879190[chr19:2580533]
Enhancers that have rs11879190[chr19:2580533]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2555465 2582297 enh17850
Astrocyte Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung
Transcript factors that have rs11879190[chr19:2580533]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2578499 2580567 TCF7L2 GTRD no Colon (HCT116) 108362603
chr19 2580522 2580535 NFKB1 JASPAR yes 112078013
chr19 2580522 2580535 NFKB2 JASPAR yes 112078014
chr19 2580527 2580533 ZNF354C JASPAR yes 112078015
chr19 2580528 2580538 ID4 JASPAR yes 112078016
chr19 2580528 2580545 RXRA JASPAR yes 112078017
chr19 2580529 2580538 SNAI2 JASPAR yes 112078018
chr19 2580530 2580535 USF2 TRANSFAC yes 112078019
Genes associated with rs11879190[chr19:2580533], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More