EnhancerDB
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  3. rs12046580[chr1:225941282]
Enhancers that have rs12046580[chr1:225941282]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12046580[chr1:225941282]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225940873 225942011 SOX2 GTRD no Neural Stem Cells (H9) 21385731
chr1 225940942 225941463 SOX2 GTRD no Neural Stem Cells (H9) 21385732
chr1 225940949 225941587 SOX2 GTRD no Neural Stem Cells (H9) 21385733
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225941073 225941975 SOX2 GTRD no Neural Stem Cells (H9) 21385735
chr1 225941087 225941489 SOX2 GTRD no Neural Stem Cells (H9) 21385736
chr1 225941167 225941500 SOX2 GTRD no Neural Stem Cells (H9) 21385737
chr1 225941253 225941426 SOX2 GTRD no Neural Stem Cells (H9) 21385738
chr1 225941262 225941283 IRF1 JASPAR yes 35767388
chr1 225941263 225941284 IRF1 JASPAR yes 35767391
chr1 225941264 225941285 IRF1 JASPAR yes 35767393
chr1 225941265 225941286 IRF1 JASPAR yes 35767395
chr1 225941266 225941287 IRF1 JASPAR yes 35767397
chr1 225941267 225941282 FOXP1 JASPAR yes 35767398
chr1 225941267 225941288 IRF1 JASPAR yes 35767399
chr1 225941268 225941283 FOXP1 JASPAR yes 35767400
chr1 225941268 225941289 IRF1 JASPAR yes 35767401
chr1 225941269 225941284 FOXP1 JASPAR yes 35767402
chr1 225941269 225941290 IRF1 JASPAR yes 35767403
chr1 225941270 225941285 FOXP1 JASPAR yes 35767404
chr1 225941272 225941287 FOXP1 JASPAR yes 35767405
chr1 225941274 225941289 FOXP1 JASPAR yes 35767406
Genes associated with rs12046580[chr1:225941282], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More