EnhancerDB
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  3. rs12060880[chr1:55039805]
Enhancers that have rs12060880[chr1:55039805]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12060880[chr1:55039805]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55039794 55039812 IRF2 JASPAR yes 28994298
chr1 55039795 55039816 IRF1 JASPAR yes 28994299
chr1 55039797 55039812 STAT2 JASPAR yes 28994300
chr1 55039798 55039812 SPIC JASPAR yes 28994301
chr1 55039799 55039811 IRF1 JASPAR yes 28994302
chr1 55039799 55039813 IRF7 JASPAR yes 28994303
chr1 55039799 55039813 IRF8 JASPAR yes 28994304
chr1 55039799 55039814 IRF9 JASPAR yes 28994305
Genes associated with rs12060880[chr1:55039805], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More