EnhancerDB
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  3. rs12061643[chr1:54846660]
Enhancers that have rs12061643[chr1:54846660]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54820685 54854719 enh11867
Bone Marrow (K562) Liver Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Blood (GM12878) Placenta Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs12061643[chr1:54846660]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54846649 54846670 REST JASPAR yes 28980404
chr1 54846652 54846661 HIC2 JASPAR yes 28980405
chr1 54846653 54846669 ZNF143 JASPAR yes 28980406
chr1 54846654 54846664 SP1 JASPAR yes 28980407
chr1 54846655 54846675 TP63 JASPAR yes 28980409
Genes associated with rs12061643[chr1:54846660], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More