EnhancerDB
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  3. rs12080375[chr1:55028755]
Enhancers that have rs12080375[chr1:55028755]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12080375[chr1:55028755]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55028746 55028759 TFAP2A JASPAR yes 28992736
chr1 55028746 55028759 TFAP2C JASPAR yes 28992737
chr1 55028754 55028759 SP1 TRANSFAC yes 28992738
Genes associated with rs12080375[chr1:55028755], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 54231133 54304533 - NDC1 ENSG00000058804.10 54304533 724222 Pancreas 0.0252945 716