EnhancerDB
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  3. rs12088448[chr1:218546170]
Enhancers that have rs12088448[chr1:218546170]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 218537025 218560381 enh12670
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung
Transcript factors that have rs12088448[chr1:218546170]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 218545972 218547014 ZNF143 GTRD no Epithelial (MCF-7) 21380685
chr1 218545972 218547014 ZNF143 GTRD no Epithelial (MCF-7) 107870136
chr1 218546058 218546951 ZBTB33 GTRD no Lung (A549) 107870137
chr1 218546150 218547069 ZNF143 GTRD no Epithelial (MCF-7) 21380686
chr1 218546150 218547069 ZNF143 GTRD no Epithelial (MCF-7) 107870138
chr1 218546155 218546170 HNF4A JASPAR yes 35372682
chr1 218546160 218547051 ZNF143 GTRD no Epithelial (MCF-7) 21380687
chr1 218546160 218547051 ZNF143 GTRD no Epithelial (MCF-7) 107870139
Genes associated with rs12088448[chr1:218546170], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More