EnhancerDB
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  3. rs12089993[chr1:201712172]
Enhancers that have rs12089993[chr1:201712172]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201710292 201749335 enh12527
Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Heart
Transcript factors that have rs12089993[chr1:201712172]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201711159 201716773 ZNF274 GTRD no Cervix (HeLa-S3) 21365291
chr1 201711159 201716773 ZNF274 GTRD no Cervix (HeLa-S3) 107857068
chr1 201711366 201712351 ZBTB33 GTRD no Lung (A549) 21365292
chr1 201711366 201712351 ZBTB33 GTRD no Lung (A549) 107857069
chr1 201711501 201715159 ZNF143 GTRD no Epithelial (MCF-7) 107857070
chr1 201711534 201712567 TEF1 GTRD no Bone (Osteoblast) 107857071
chr1 201711660 201713990 ZNF274 GTRD no Bone Marrow (K562) 107857072
chr1 201711669 201715412 ZNF143 GTRD no Epithelial (MCF-7) 107857073
chr1 201711731 201715165 ZNF274 GTRD no Cervix (HeLa-S3) 21365293
chr1 201711731 201715165 ZNF274 GTRD no Cervix (HeLa-S3) 107857074
chr1 201711777 201712326 ZNF274 GTRD no Cervix (HeLa-S3) 21365294
chr1 201711777 201712326 ZNF274 GTRD no Cervix (HeLa-S3) 107857075
chr1 201711832 201712225 ZNF274 GTRD no Bone Marrow (K562) 107857076
chr1 201712171 201712182 TBX20 JASPAR yes 34527175
Genes associated with rs12089993[chr1:201712172], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More