EnhancerDB
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  3. rs12090950[chr1:201429381]
Enhancers that have rs12090950[chr1:201429381]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12090950[chr1:201429381]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 21364083
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 107856210
chr1 201429342 201430593 TCF7L2 GTRD no Colon (HCT116) 21364084
chr1 201429352 201430575 ZNF143 GTRD no Epithelial (MCF-7) 21364085
chr1 201429375 201430457 ZNF143 GTRD no Epithelial (MCF-7) 21364086
Genes associated with rs12090950[chr1:201429381], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More