EnhancerDB
  1. Home
  2. SNP
  3. rs12090964[chr1:55023851]
Enhancers that have rs12090964[chr1:55023851]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12090964[chr1:55023851]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55023847 55023851 H1TF2 TRANSFAC yes 28991961
chr1 55023847 55023851 NFE TRANSFAC yes 28991962
chr1 55023847 55023851 SRF TRANSFAC yes 28991963
chr1 55023850 55023865 MEF2A JASPAR yes 28991964
chr1 55023851 55023866 MEF2A JASPAR yes 28991965
Genes associated with rs12090964[chr1:55023851], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More