EnhancerDB
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  3. rs12091249[chr1:201739666]
Enhancers that have rs12091249[chr1:201739666]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201710292 201749335 enh12527
Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Heart
Transcript factors that have rs12091249[chr1:201739666]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201738081 201742956 ZNF143 GTRD no Epithelial (MCF-7) 107857096
chr1 201738081 201742956 ZNF143 GTRD no Epithelial (MCF-7) 107857097
chr1 201738082 201743153 ZNF143 GTRD no Epithelial (MCF-7) 107857098
chr1 201738082 201743153 ZNF143 GTRD no Epithelial (MCF-7) 107857099
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857100
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857101
chr1 201738150 201746951 ZNF143 GTRD no Epithelial (MCF-7) 107857102
chr1 201738449 201743729 ZNF143 GTRD no Epithelial (MCF-7) 107857103
chr1 201738449 201743729 ZNF143 GTRD no Epithelial (MCF-7) 107857104
chr1 201738462 201742325 ZNF143 GTRD no Epithelial (MCF-7) 107857105
chr1 201738601 201743177 ZNF143 GTRD no Epithelial (MCF-7) 107857106
chr1 201738601 201743177 ZNF143 GTRD no Epithelial (MCF-7) 107857107
chr1 201738669 201741383 ZNF143 GTRD no Epithelial (MCF-7) 107857108
chr1 201738751 201743050 ZNF143 GTRD no Epithelial (MCF-7) 107857109
chr1 201738751 201743050 ZNF143 GTRD no Epithelial (MCF-7) 107857110
chr1 201738869 201740399 ZNF274 GTRD no Bone Marrow (K562) 107857112
chr1 201738871 201741592 TCF7L2 GTRD no Colon (HCT116) 107857113
chr1 201738881 201741573 ZNF143 GTRD no Epithelial (MCF-7) 107857114
chr1 201738912 201740477 ZNF143 GTRD no Epithelial (MCF-7) 107857115
chr1 201738936 201741261 ZNF143 GTRD no Epithelial (MCF-7) 107857116
chr1 201738943 201740003 ZNF143 GTRD no Epithelial (MCF-7) 107857117
chr1 201738964 201741430 ZNF143 GTRD no Epithelial (MCF-7) 107857118
chr1 201738972 201742525 ZNF143 GTRD no Epithelial (MCF-7) 107857119
chr1 201739012 201741628 ZNF143 GTRD no Epithelial (MCF-7) 107857120
chr1 201739109 201741275 ZNF143 GTRD no Epithelial (MCF-7) 107857121
chr1 201739118 201741510 ZNF143 GTRD no Epithelial (MCF-7) 107857122
chr1 201739136 201740574 TCF7L2 GTRD no Colon (HCT116) 107857123
chr1 201739148 201740078 TCF7L2 GTRD no Colon (HCT116) 107857124
chr1 201739155 201740633 ZNF143 GTRD no Epithelial (MCF-7) 107857125
chr1 201739185 201740580 TCF7L2 GTRD no Colon (HCT116) 107857126
chr1 201739213 201741305 TCF7L2 GTRD no Colon (HCT116) 107857127
chr1 201739255 201740608 TCF7L2 GTRD no Colon (HCT116) 107857128
chr1 201739293 201741248 TCF7L2 GTRD no Colon (HCT116) 107857129
chr1 201739323 201740069 ZBTB33 GTRD no Brain (SK-N-SH) 107857130
chr1 201739327 201740820 TCF7L2 GTRD no Colon (HCT116) 107857131
chr1 201739395 201739911 ZNF274 GTRD no Blood (GM12878) 107857132
chr1 201739400 201740466 ZNF274 GTRD no Blood (GM12878) 107857133
chr1 201739400 201740745 TCF7L2 GTRD no Colon (HCT116) 107857134
chr1 201739426 201740163 ZBTB33 GTRD no Brain (SK-N-SH) 107857135
chr1 201739436 201740661 TCF7L2 GTRD no Colon (HCT116) 107857136
chr1 201739466 201742269 ZNF143 GTRD no Epithelial (MCF-7) 107857137
chr1 201739508 201740077 ZNF274 GTRD no Bone Marrow (K562) 107857138
chr1 201739519 201740678 TCF7L2 GTRD no Colon (HCT116) 107857139
chr1 201739526 201740059 CTCF GTRD no Spleen 107857140
chr1 201739560 201740654 ZNF274 GTRD no Bone Marrow (K562) 107857141
chr1 201739661 201739676 MEF2C JASPAR yes 34531500
chr1 201739662 201739677 MEF2A JASPAR yes 34531501
chr1 201739663 201739675 MEF2A JASPAR yes 34531502
chr1 201739663 201739675 MEF2D JASPAR yes 34531503
Genes associated with rs12091249[chr1:201739666], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More