EnhancerDB
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  3. rs12117788[chr1:204049200]
Enhancers that have rs12117788[chr1:204049200]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204045525 204080675 enh12573
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12117788[chr1:204049200]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204049175 204049691 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21370074
chr1 204049175 204049691 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107859539
chr1 204049185 204049855 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21370075
chr1 204049185 204049855 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107859540
chr1 204049198 204049219 ZNF263 JASPAR yes 34676919
Genes associated with rs12117788[chr1:204049200], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More