EnhancerDB
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  3. rs12122496[chr1:204058696]
Enhancers that have rs12122496[chr1:204058696]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204045525 204080675 enh12573
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12122496[chr1:204058696]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204056945 204058865 TCF7L2 GTRD no Colon (HCT116) 21370127
chr1 204056945 204058865 TCF7L2 GTRD no Colon (HCT116) 107859594
chr1 204057381 204058700 TCF7L2 GTRD no Colon (HCT116) 21370149
chr1 204057381 204058700 TCF7L2 GTRD no Colon (HCT116) 107859617
chr1 204058691 204058696 SP1 TRANSFAC yes 34678289
chr1 204058692 204058711 CTCF JASPAR yes 34678290
chr1 204058693 204058705 GLI2 JASPAR yes 34678291
Genes associated with rs12122496[chr1:204058696], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More