EnhancerDB
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  3. rs12139597[chr1:27474071]
Enhancers that have rs12139597[chr1:27474071]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27456674 27477960 enh171
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12139597[chr1:27474071]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27474060 27474071 E2F4 JASPAR yes 27682055
chr1 27474060 27474071 E2F6 JASPAR yes 27682056
Genes associated with rs12139597[chr1:27474071], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 27425306 27493472 - SLC9A1 ENSG00000090020.6 27493472 0 Thyroid 6.49867e-06 384