EnhancerDB
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  3. rs12139898[chr1:212094020]
Enhancers that have rs12139898[chr1:212094020]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 212081505 212111174 enh12636
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs12139898[chr1:212094020]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 212093668 212094025 ZNF143 GTRD no Epithelial (MCF-7) 21377583
chr1 212093886 212094430 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377584
chr1 212093889 212094289 ZNF143 GTRD no Epithelial (MCF-7) 21377585
chr1 212093919 212094298 ZNF143 GTRD no Epithelial (MCF-7) 21377586
chr1 212093924 212094264 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377587
chr1 212093944 212094334 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377588
chr1 212093957 212094337 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377589
chr1 212093979 212094255 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377590
chr1 212093993 212094293 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377591
chr1 212093993 212094329 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377592
chr1 212093995 212094265 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377593
chr1 212093998 212094288 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21377594
chr1 212094006 212094270 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21377595
chr1 212094007 212094022 FOXP1 JASPAR yes 35091722
Genes associated with rs12139898[chr1:212094020], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More