EnhancerDB
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  3. rs12239415[chr1:225635483]
Enhancers that have rs12239415[chr1:225635483]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225626185 225658051 enh950
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12239415[chr1:225635483]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225635468 225635486 RARA JASPAR yes 35741328
chr1 225635479 225635489 ZNF740 JASPAR yes 35741329
chr1 225635483 225635501 SRF JASPAR yes 35741330
Genes associated with rs12239415[chr1:225635483], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 225589204 225616627 - LBR ENSG00000143815.10 225616627 18856 Esophagus 4.80452e-11 1885