EnhancerDB
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  3. rs12253668[chr10:33401100]
Enhancers that have rs12253668[chr10:33401100]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr10 33393842 33437095 enh1172
Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs12253668[chr10:33401100]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr10 33401093 33401105 PKNOX2 JASPAR yes 126571703
chr10 33401094 33401104 ID4 JASPAR yes 126571704
chr10 33401094 33401104 TCF3 JASPAR yes 126571705
chr10 33401094 33401104 TCF4 JASPAR yes 126571706
chr10 33401095 33401104 SNAI2 JASPAR yes 126571707
chr10 33401096 33401101 USF2 TRANSFAC yes 126571708
chr10 33401096 33401891 ZNF274 GTRD no Liver (HepG2) 21428511
chr10 33401098 33401106 MEIS2 JASPAR yes 126571709
chr10 33401098 33401106 MEIS3 JASPAR yes 126571710
chr10 33401099 33401103 NFE TRANSFAC yes 126571711
chr10 33401099 33401106 MEIS1 JASPAR yes 126571712
Genes associated with rs12253668[chr10:33401100], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More