EnhancerDB
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Enhancers that have rs12301497[chr12:52540376]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
chr12 52540237 52540565 vista13444
VISTA
Transcript factors that have rs12301497[chr12:52540376]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033122
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033123
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033124
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033125
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546373
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033126
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033127
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033128
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033129
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 21546376
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 108033132
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 108033133
chr12 52539959 52540492 ZNF274 GTRD no Bone Marrow (K562) 108033136
chr12 52540016 52540480 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21546379
chr12 52540016 52540480 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108033137
chr12 52540315 52540919 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546381
chr12 52540315 52540919 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033139
chr12 52540365 52541062 TCF7L2 GTRD no Colon (HCT116) 21546382
chr12 52540365 52541062 TCF7L2 GTRD no Colon (HCT116) 108033140
chr12 52540365 52541062 TCF7L2 GTRD no Colon (HCT116) 108033141
Genes associated with rs12301497[chr12:52540376], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 51745031 51786651 - GALNT6 ENSG00000139629.11 51786651 753725 Heart 0.3845 12068