EnhancerDB
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  3. rs12327669[chr19:2488090]
Enhancers that have rs12327669[chr19:2488090]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2481141 2509475 enh4958
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs12327669[chr19:2488090]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2487107 2490254 TCF7L2 GTRD no Colon (HCT116) 108360382
chr19 2487601 2489790 TCF7L2 GTRD no Colon (HCT116) 108360383
chr19 2487661 2489954 TCF7L2 GTRD no Colon (HCT116) 108360384
chr19 2487692 2488301 ZNF274 GTRD no Bone Marrow (K562) 21835495
chr19 2487759 2488311 ZNF143 GTRD no Epithelial (MCF-7) 21835496
chr19 2487763 2490018 TCF7L2 GTRD no Colon (HCT116) 108360385
chr19 2487775 2489823 TCF7L2 GTRD no Colon (HCT116) 108360386
chr19 2487809 2488144 ZNF274 GTRD no Bone Marrow (K562) 21835498
chr19 2487820 2488097 ZNF274 GTRD no Bone Marrow (K562) 21835499
chr19 2487933 2489965 TCF7L2 GTRD no Colon (HCT116) 108360387
chr19 2487990 2490105 ZNF274 GTRD no Blood (GM12878) 108360388
chr19 2488090 2488104 RORA JASPAR yes 112065453
Genes associated with rs12327669[chr19:2488090], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More