EnhancerDB
  1. Home
  2. SNP
  3. rs12401297[chr1:203620076]
Enhancers that have rs12401297[chr1:203620076]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203594185 203628195 enh12562
Bone Marrow (K562) Astrocyte Colon (HCT116) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12401297[chr1:203620076]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203619295 203620185 POLR2A UCSC Txn Factor no Conserved 107859147
chr1 203619302 203620186 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21369671
chr1 203619302 203620186 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107859150
chr1 203619518 203620174 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21369713
chr1 203619518 203620174 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107859203
chr1 203620070 203620084 IRF7 JASPAR yes 34651027
chr1 203620070 203620085 IRF9 JASPAR yes 34651028
Genes associated with rs12401297[chr1:203620076], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More