EnhancerDB
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  3. rs12402212[chr1:202072890]
Enhancers that have rs12402212[chr1:202072890]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 202068088 202086155 enh12535
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12402212[chr1:202072890]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202071997 202073029 ZNF274 GTRD no Cervix (HeLa-S3) 21367093
chr1 202072002 202073099 ZNF143 GTRD no Epithelial (MCF-7) 21367094
chr1 202072072 202073168 ZNF143 GTRD no Epithelial (MCF-7) 21367095
chr1 202072103 202073033 ZNF274 GTRD no Cervix (HeLa-S3) 21367097
chr1 202072134 202072929 ZNF274 GTRD no Cervix (HeLa-S3) 21367099
chr1 202072137 202072916 ZNF274 GTRD no Cervix (HeLa-S3) 21367100
chr1 202072148 202073154 ZNF143 GTRD no Epithelial (MCF-7) 21367102
chr1 202072155 202073096 ZNF143 GTRD no Epithelial (MCF-7) 21367104
chr1 202072163 202072924 ZNF143 GTRD no Epithelial (MCF-7) 21367105
chr1 202072252 202072926 ZNF143 GTRD no Epithelial (MCF-7) 21367109
chr1 202072263 202072974 ZNF274 GTRD no Bone Marrow (K562) 21367110
chr1 202072274 202072990 ZNF143 GTRD no Epithelial (MCF-7) 21367111
chr1 202072282 202072914 ZNF143 GTRD no Epithelial (MCF-7) 21367113
chr1 202072708 202073055 ZNF143 GTRD no Epithelial (MCF-7) 21367115
chr1 202072889 202072893 NFE TRANSFAC yes 34553930
Genes associated with rs12402212[chr1:202072890], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 201252580 201302121 + PKP1 ENSG00000081277.7 201252580 770769 Pancreas 0.184124 1703