EnhancerDB
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  3. rs12405388[chr1:208346777]
Enhancers that have rs12405388[chr1:208346777]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 208343485 208368555 enh12612
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Brain (SK-N-SH) Esophagus Bone (Osteoblast) Blood (GM12878) Stomach Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs12405388[chr1:208346777]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 208346768 208346778 GSC2 JASPAR yes 34902972
chr1 208346769 208346777 OTX1 JASPAR yes 34902973
chr1 208346769 208346777 OTX2 JASPAR yes 34902974
Genes associated with rs12405388[chr1:208346777], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More