EnhancerDB
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  3. rs12406758[chr1:55038249]
Enhancers that have rs12406758[chr1:55038249]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12406758[chr1:55038249]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55038234 55038249 TFAP2A JASPAR yes 28994074
chr1 55038234 55038249 TFAP2C JASPAR yes 28994075
chr1 55038236 55038250 GLIS2 JASPAR yes 28994076
chr1 55038239 55038254 NR2C2 JASPAR yes 28994077
chr1 55038240 55038250 SP1 JASPAR yes 28994078
chr1 55038240 55038250 ZNF740 JASPAR yes 28994079
chr1 55038241 55038251 SP1 JASPAR yes 28994080
chr1 55038241 55038251 ZNF740 JASPAR yes 28994081
chr1 55038242 55038252 SP1 JASPAR yes 28994082
chr1 55038242 55038252 ZNF740 JASPAR yes 28994083
chr1 55038249 55038253 ESR1 TRANSFAC yes 28994084
Genes associated with rs12406758[chr1:55038249], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More