EnhancerDB
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  3. rs12409459[chr1:94234413]
Enhancers that have rs12409459[chr1:94234413]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 94213125 94252475 enh499
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs12409459[chr1:94234413]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 94233947 94234543 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107815208
chr1 94234100 94234510 GATA2 UCSC Txn Factor no Conserved 107815209
chr1 94234156 94234436 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107815210
chr1 94234197 94234487 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107815212
chr1 94234391 94235183 ZNF274 GTRD no Liver (HepG2) 107815213
chr1 94234411 94234428 BCL6B JASPAR yes 30833844
chr1 94234413 94234417 H4TF2 TRANSFAC yes 30833845
Genes associated with rs12409459[chr1:94234413], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More