EnhancerDB
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  3. rs12426954[chr12:116939857]
Enhancers that have rs12426954[chr12:116939857]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 116926365 116948935 enh43835
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Esophagus Bone (Osteoblast) Stomach Colon (HCT116) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Epithelial (MCF-7)
Transcript factors that have rs12426954[chr12:116939857]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 116939623 116940119 ZNF274 GTRD no Bone Marrow (K562) 21577125
chr12 116939843 116939858 TFAP2A JASPAR yes 124003604
chr12 116939843 116939858 TFAP2C JASPAR yes 124003605
chr12 116939846 116939858 TFAP2A JASPAR yes 124003606
chr12 116939846 116939858 TFAP2B JASPAR yes 124003607
chr12 116939846 116939858 TFAP2C JASPAR yes 124003608
chr12 116939846 116939861 TFAP2A JASPAR yes 124003609
chr12 116939853 116939857 LFA1 TRANSFAC yes 124003611
chr12 116939853 116939865 HES5 JASPAR yes 124003612
chr12 116939857 116939867 NFIA JASPAR yes 124003613
Genes associated with rs12426954[chr12:116939857], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More