EnhancerDB
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  3. rs12452006[chr17:49035315]
Enhancers that have rs12452006[chr17:49035315]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 49015225 49039275 enh17224
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12452006[chr17:49035315]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 49035060 49036748 ZNF143 GTRD no Epithelial (MCF-7) 21771875
chr17 49035127 49036359 TCF7L2 GTRD no Colon (HCT116) 21771876
chr17 49035203 49036690 ZNF143 GTRD no Epithelial (MCF-7) 21771877
chr17 49035215 49036454 ZNF143 GTRD no Epithelial (MCF-7) 21771878
chr17 49035215 49036679 ZNF143 GTRD no Epithelial (MCF-7) 21771879
chr17 49035231 49036464 TCF7L2 GTRD no Colon (HCT116) 21771880
chr17 49035241 49036441 TCF7L2 GTRD no Colon (HCT116) 21771881
chr17 49035244 49036768 ZNF143 GTRD no Epithelial (MCF-7) 21771882
chr17 49035257 49036419 ZNF143 GTRD no Epithelial (MCF-7) 21771883
chr17 49035272 49036503 TCF7L2 GTRD no Colon (HCT116) 21771884
chr17 49035273 49036846 ZNF143 GTRD no Epithelial (MCF-7) 21771885
chr17 49035275 49036437 TCF7L2 GTRD no Colon (HCT116) 21771886
chr17 49035300 49036423 TCF7L2 GTRD no Colon (HCT116) 21771887
chr17 49035304 49035323 PAX5 JASPAR yes 54739231
chr17 49035304 49036434 ZNF274 GTRD no Bone Marrow (K562) 21771888
chr17 49035304 49036652 TCF7L2 GTRD no Colon (HCT116) 21771889
chr17 49035305 49036614 ZNF143 GTRD no Epithelial (MCF-7) 21771890
chr17 49035310 49035316 LEF1 TRANSFAC yes 54739232
chr17 49035310 49035316 SOX10 JASPAR yes 54739233
Genes associated with rs12452006[chr17:49035315], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More