EnhancerDB
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  3. rs12453420[chr17:25899668]
Enhancers that have rs12453420[chr17:25899668]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25884725 25904399 enh17065
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Blood (T-cell) Astrocyte Stomach Muscle (A673) Placenta Colon (HCT116) Uterus Spleen Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr17 25898536 25901861 vista677
VISTA
Transcript factors that have rs12453420[chr17:25899668]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25899661 25899670 ZEB1 JASPAR yes 9071
chr17 25899661 25899670 ZEB1 JASPAR yes 53647229
chr17 25899664 25899669 USF2 TRANSFAC yes 9072
chr17 25899664 25899669 USF2 TRANSFAC yes 53647230
Genes associated with rs12453420[chr17:25899668], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 25783670 25953461 + KSR1 ENSG00000141068.9 25783670 0 Esophagus 0.0965853 15554