EnhancerDB
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  3. rs12529727[chr6:107989531]
Enhancers that have rs12529727[chr6:107989531]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 107984585 108002855 enh9300
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Blood (T-cell) Astrocyte Bone (Osteoblast) Colon (HCT116) Uterus Blood (Karpas-422) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Stomach
Transcript factors that have rs12529727[chr6:107989531]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 107989520 107989535 NR2C2 JASPAR yes 104128223
chr6 107989521 107989535 RXRB JASPAR yes 104128224
chr6 107989521 107989535 RXRG JASPAR yes 104128225
chr6 107989523 107989543 RREB1 JASPAR yes 104128227
Genes associated with rs12529727[chr6:107989531], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr6 108532426 108582464 - SNX3 ENSG00000112335.10 108582464 542895 Spleen 0.370012 6850