EnhancerDB
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  3. rs12562612[chr1:225958099]
Enhancers that have rs12562612[chr1:225958099]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12562612[chr1:225958099]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225957685 225958606 ZNF143 GTRD no Epithelial (MCF-7) 21385870
chr1 225957933 225958656 SOX2 GTRD no Neural Stem Cells (H9) 21385871
chr1 225957940 225958819 SOX2 GTRD no Neural Stem Cells (H9) 21385872
chr1 225957951 225958843 SOX2 GTRD no Neural Stem Cells (H9) 21385873
chr1 225957953 225958500 ZNF274 GTRD no Liver (HepG2) 21385874
chr1 225957964 225958677 SOX2 GTRD no Neural Stem Cells (H9) 21385875
chr1 225958026 225958741 SOX2 GTRD no Neural Stem Cells (H9) 21385876
chr1 225958027 225958481 ZNF143 GTRD no Epithelial (MCF-7) 21385877
chr1 225958030 225958505 ZNF143 GTRD no Epithelial (MCF-7) 21385878
chr1 225958044 225958511 ZNF274 GTRD no Liver (HepG2) 21385879
chr1 225958059 225958442 SOX2 GTRD no Neural Stem Cells (H9) 21385880
chr1 225958090 225958664 SOX2 GTRD no Neural Stem Cells (H9) 21385881
Genes associated with rs12562612[chr1:225958099], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More