EnhancerDB
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  3. rs12562971[chr1:232754417]
Enhancers that have rs12562971[chr1:232754417]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 232744026 232773755 enh12786
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Lung Muscle (A673) Heart
chr1 232753930 232757436 vista147
VISTA
Transcript factors that have rs12562971[chr1:232754417]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 232754401 232754422 IRF1 JASPAR yes 36177954
chr1 232754401 232754422 IRF1 JASPAR yes 71162535
chr1 232754402 232754417 FOXP1 JASPAR yes 36177955
chr1 232754402 232754417 FOXP1 JASPAR yes 71162536
chr1 232754405 232754420 STAT2 JASPAR yes 36177956
chr1 232754405 232754420 STAT2 JASPAR yes 71162537
Genes associated with rs12562971[chr1:232754417], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More