EnhancerDB
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Enhancers that have rs12578642[chr12:52618050]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr12 52617951 52618303 vista13468
VISTA
Transcript factors that have rs12578642[chr12:52618050]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52616921 52618080 ZNF143 GTRD no Epithelial (MCF-7) 21546873
chr12 52616921 52618080 ZNF143 GTRD no Epithelial (MCF-7) 108033753
chr12 52616933 52618176 ZNF143 GTRD no Epithelial (MCF-7) 21546875
chr12 52616933 52618176 ZNF143 GTRD no Epithelial (MCF-7) 108033755
chr12 52616971 52618210 ZNF143 GTRD no Epithelial (MCF-7) 21546877
chr12 52616971 52618210 ZNF143 GTRD no Epithelial (MCF-7) 108033756
chr12 52617005 52618050 ZNF143 GTRD no Epithelial (MCF-7) 21546879
chr12 52617005 52618050 ZNF143 GTRD no Epithelial (MCF-7) 108033758
chr12 52617895 52618225 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546891
chr12 52617895 52618225 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033763
chr12 52617920 52618184 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546892
chr12 52617920 52618184 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033764
Genes associated with rs12578642[chr12:52618050], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More