EnhancerDB
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  3. rs12598415[chr16:88340595]
Enhancers that have rs12598415[chr16:88340595]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88327201 88357367 enh16902
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Uterus
chr16 88340379 88340720 vista23489
VISTA
Transcript factors that have rs12598415[chr16:88340595]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221908
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221909
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221910
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221932
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221933
chr16 88339563 88343230 TCF7L2 GTRD no Colon (HCT116) 108221946
chr16 88339610 88341034 TCF7L2 GTRD no Colon (HCT116) 108221947
chr16 88339881 88341423 ZNF274 GTRD no Bone Marrow (K562) 108221948
chr16 88339899 88341285 ZNF274 GTRD no Bone Marrow (K562) 108221949
chr16 88340010 88341991 ZNF143 GTRD no Epithelial (MCF-7) 108221951
chr16 88340159 88340604 ZNF274 GTRD no Liver (HepG2) 108221954
chr16 88340397 88340673 CEBPB UCSC Txn Factor no Conserved 108221955
chr16 88340421 88343363 TCF7L2 GTRD no Colon (HCT116) 108221956
chr16 88340455 88341013 TCF7L2 GTRD no Colon (HCT116) 108221957
chr16 88340458 88341137 TCF7L2 GTRD no Colon (HCT116) 108221958
chr16 88340525 88340781 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21735992
chr16 88340525 88340781 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108221959
chr16 88340527 88340971 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21735993
chr16 88340527 88340971 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108221960
chr16 88340527 88341128 TCF7L2 GTRD no Colon (HCT116) 108221961
chr16 88340535 88340911 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108221962
chr16 88340590 88340611 ZNF263 JASPAR yes 12276429
chr16 88340590 88340611 ZNF263 JASPAR yes 49417080
Genes associated with rs12598415[chr16:88340595], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More