EnhancerDB
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Enhancers that have rs12603998[chr17:39066651]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39055145 39077753 enh17145
Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr17 39066622 39066986 vista24760
VISTA
Transcript factors that have rs12603998[chr17:39066651]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39065824 39066914 P63 GTRD no Skin (Keratinocyte) 21757205
chr17 39065824 39066914 P63 GTRD no Skin (Keratinocyte) 108257921
chr17 39065887 39066797 P63 GTRD no Skin (Keratinocyte) 21757206
chr17 39065887 39066797 P63 GTRD no Skin (Keratinocyte) 108257922
chr17 39065955 39066745 P63 GTRD no Skin (Keratinocyte) 21757207
chr17 39065955 39066745 P63 GTRD no Skin (Keratinocyte) 108257923
chr17 39066064 39066817 P63 GTRD no Skin (Keratinocyte) 21757208
chr17 39066064 39066817 P63 GTRD no Skin (Keratinocyte) 108257924
chr17 39066602 39067098 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21757214
chr17 39066602 39067098 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108257925
chr17 39066610 39067005 GATA3 UCSC Txn Factor no Conserved 108257926
chr17 39066633 39067077 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108257927
Genes associated with rs12603998[chr17:39066651], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More