EnhancerDB
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  3. rs1269080[chr1:201431635]
Enhancers that have rs1269080[chr1:201431635]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1269080[chr1:201431635]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 21364083
chr1 201428969 201431998 ZNF143 GTRD no Epithelial (MCF-7) 107856210
chr1 201430736 201431969 ZNF143 GTRD no Epithelial (MCF-7) 21364137
chr1 201430736 201431969 ZNF143 GTRD no Epithelial (MCF-7) 107856221
chr1 201431058 201431682 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107856257
chr1 201431324 201431971 ZNF143 GTRD no Epithelial (MCF-7) 21364180
chr1 201431622 201431636 PLAG1 JASPAR yes 34496458
chr1 201431623 201431637 PLAG1 JASPAR yes 34496460
chr1 201431630 201431635 SP1 TRANSFAC yes 34496461
chr1 201431631 201431636 SP1 TRANSFAC yes 34496462
chr1 201431635 201431652 RARA JASPAR yes 34496463
chr1 201431635 201431652 RXRA JASPAR yes 34496464
Genes associated with rs1269080[chr1:201431635], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More