EnhancerDB
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  3. rs12708728[chr16:11589079]
Enhancers that have rs12708728[chr16:11589079]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 11585463 11594633 enh16536
Liver Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12708728[chr16:11589079]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 11589064 11589079 FOXP1 JASPAR yes 9514092
chr16 11589064 11589085 IRF1 JASPAR yes 9514093
chr16 11589065 11589080 FOXP1 JASPAR yes 9514094
chr16 11589065 11589086 IRF1 JASPAR yes 9514095
chr16 11589066 11589081 FOXP1 JASPAR yes 9514096
chr16 11589066 11589087 IRF1 JASPAR yes 9514097
chr16 11589067 11589082 FOXP1 JASPAR yes 9514098
chr16 11589067 11589088 IRF1 JASPAR yes 9514099
chr16 11589068 11589083 FOXP1 JASPAR yes 9514100
chr16 11589068 11589089 IRF1 JASPAR yes 9514101
chr16 11589069 11589084 FOXP1 JASPAR yes 9514102
chr16 11589071 11589086 FOXP1 JASPAR yes 9514103
chr16 11589072 11589093 IRF1 JASPAR yes 9514104
chr16 11589073 11589088 FOXP1 JASPAR yes 9514105
chr16 11589073 11589094 IRF1 JASPAR yes 9514106
chr16 11589077 11589092 STAT2 JASPAR yes 9514107
chr16 11589078 11589093 FOXP1 JASPAR yes 9514108
chr16 11589078 11589099 IRF1 JASPAR yes 9514109
chr16 11589079 11589090 FOXA1 JASPAR yes 9514110
Genes associated with rs12708728[chr16:11589079], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More