EnhancerDB
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  3. rs12724172[chr1:1609159]
Enhancers that have rs12724172[chr1:1609159]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1607365 1622353 enh2
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs12724172[chr1:1609159]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1609069 1609701 RUNX3 UCSC Txn Factor no Conserved 107801794
chr1 1609149 1609162 NR2F1 JASPAR yes 26197750
Genes associated with rs12724172[chr1:1609159], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 1656277 1677431 - SLC35E2 ENSG00000215790.2 1677431 47118 Esophagus 2.1126e-22 50