EnhancerDB
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  3. rs12729652[chr1:27046982]
Enhancers that have rs12729652[chr1:27046982]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27041525 27053715 enh11655
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12729652[chr1:27046982]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27046966 27046987 IRF1 JASPAR yes 27652811
chr1 27046967 27046982 FOXP1 JASPAR yes 27652812
chr1 27046968 27046983 FOXP1 JASPAR yes 27652813
Genes associated with rs12729652[chr1:27046982], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 27730730 27816669 - WASF2 ENSG00000158195.6 27816669 683748 Heart 0.0454319 392