EnhancerDB
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  3. rs12729952[chr1:224390345]
Enhancers that have rs12729952[chr1:224390345]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 224381693 224395855 enh12716
Bone Marrow (K562) Astrocyte Colon (HCT116) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs12729952[chr1:224390345]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 224390131 224391897 TEF1 GTRD no Bone (Osteoblast) 21384202
chr1 224390338 224390350 PKNOX1 JASPAR yes 35693290
chr1 224390338 224390350 TGIF1 JASPAR yes 35693291
chr1 224390338 224390350 TGIF2 JASPAR yes 35693292
chr1 224390338 224390358 TP63 JASPAR yes 35693293
chr1 224390339 224390357 TP53 JASPAR yes 35693294
chr1 224390339 224390357 TP73 JASPAR yes 35693295
chr1 224390343 224390354 CEBPB JASPAR yes 35693296
Genes associated with rs12729952[chr1:224390345], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More