EnhancerDB
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  3. rs12758509[chr1:223892925]
Enhancers that have rs12758509[chr1:223892925]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 223892678 223892997 vista5270
VISTA
Transcript factors that have rs12758509[chr1:223892925]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223892496 223893092 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21383856
chr1 223892496 223893092 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107873032
chr1 223892737 223893085 SOX2 GTRD no Neural Stem Cells (H9) 107873034
chr1 223892742 223892936 SOX2 GTRD no Neural Stem Cells (H9) 107873035
Genes associated with rs12758509[chr1:223892925], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More