EnhancerDB
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  3. rs12823385[chr12:65020085]
Enhancers that have rs12823385[chr12:65020085]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 65008245 65038815 enh2404
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12823385[chr12:65020085]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 65019618 65020189 MYOD GTRD no Muscle (Myoblast) 108041891
chr12 65019971 65020350 SOX2 GTRD no Neural Stem Cells (H9) 21552884
chr12 65019971 65020350 SOX2 GTRD no Neural Stem Cells (H9) 108041893
chr12 65020074 65020088 PLAG1 JASPAR yes 121417583
chr12 65020082 65020087 SP1 TRANSFAC yes 121417584
chr12 65020085 65020089 LFA1 TRANSFAC yes 121417585
Genes associated with rs12823385[chr12:65020085], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More