EnhancerDB
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  3. rs12929778[chr16:85585197]
Enhancers that have rs12929778[chr16:85585197]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85541745 85623813 enh16872
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12929778[chr16:85585197]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85584252 85585723 TCF7L2 GTRD no Colon (HCT116) 21728683
chr16 85584548 85586081 TCF7L2 GTRD no Colon (HCT116) 21728687
chr16 85584617 85587061 ZNF274 GTRD no Bone Marrow (K562) 21728688
chr16 85584617 85587061 ZNF274 GTRD no Bone Marrow (K562) 108215960
chr16 85584617 85587061 ZNF274 GTRD no Bone Marrow (K562) 108215961
chr16 85584682 85585905 TCF7L2 GTRD no Colon (HCT116) 21728690
chr16 85584707 85586166 ZNF274 GTRD no Bone Marrow (K562) 21728694
chr16 85584716 85586107 ZNF143 GTRD no Epithelial (MCF-7) 21728695
chr16 85584750 85585393 ZNF274 GTRD no Bone Marrow (K562) 21728696
chr16 85584751 85585749 TCF7L2 GTRD no Colon (HCT116) 21728697
chr16 85584754 85586751 ZNF143 GTRD no Epithelial (MCF-7) 21728698
chr16 85584754 85586751 ZNF143 GTRD no Epithelial (MCF-7) 108215962
chr16 85584755 85586832 ZNF274 GTRD no Bone Marrow (K562) 21728699
chr16 85584755 85586832 ZNF274 GTRD no Bone Marrow (K562) 108215963
chr16 85584821 85585382 ZNF274 GTRD no Bone Marrow (K562) 21728700
chr16 85584912 85586884 ZNF274 GTRD no Bone Marrow (K562) 21728701
chr16 85584912 85586884 ZNF274 GTRD no Bone Marrow (K562) 108215964
chr16 85584915 85586756 ZNF274 GTRD no Bone Marrow (K562) 21728702
chr16 85584915 85586756 ZNF274 GTRD no Bone Marrow (K562) 108215965
chr16 85584938 85585280 ZNF274 GTRD no Bone Marrow (K562) 21728703
chr16 85585097 85586399 ZNF274 GTRD no Bone Marrow (K562) 21728704
chr16 85585097 85586399 ZNF274 GTRD no Bone Marrow (K562) 108215966
chr16 85585178 85585198 RREB1 JASPAR yes 12075502
chr16 85585185 85585206 IRF1 JASPAR yes 12075504
chr16 85585187 85585202 STAT2 JASPAR yes 12075505
chr16 85585188 85585202 SPIC JASPAR yes 12075506
chr16 85585188 85585202 STAT1 JASPAR yes 12075507
chr16 85585189 85585203 IRF8 JASPAR yes 12075508
chr16 85585189 85585204 IRF9 JASPAR yes 12075509
Genes associated with rs12929778[chr16:85585197], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More