EnhancerDB
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  3. rs12935623[chr16:85339259]
Enhancers that have rs12935623[chr16:85339259]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85333005 85372015 enh16866
Bone Marrow (K562) Brain (SK-N-MC) Liver Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12935623[chr16:85339259]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85338695 85339549 TCF7L2 GTRD no Colon (HCT116) 21723005
chr16 85338704 85339547 ZNF274 GTRD no Bone Marrow (K562) 21723006
chr16 85338705 85339481 TCF7L2 GTRD no Colon (HCT116) 21723007
chr16 85338714 85339500 ZNF143 GTRD no Epithelial (MCF-7) 21723008
chr16 85338776 85339625 TCF7L2 GTRD no Colon (HCT116) 21723009
chr16 85339240 85339259 PAX5 JASPAR yes 12044803
chr16 85339248 85339263 MEF2A JASPAR yes 12044804
chr16 85339249 85339264 MEF2C JASPAR yes 12044805
chr16 85339253 85339483 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21723011
chr16 85339254 85339534 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21723012
chr16 85339256 85339271 MEF2A JASPAR yes 12044806
chr16 85339257 85339272 MEF2C JASPAR yes 12044807
chr16 85339258 85339270 MEF2A JASPAR yes 12044808
chr16 85339258 85339270 MEF2B JASPAR yes 12044809
chr16 85339258 85339270 MEF2D JASPAR yes 12044810
Genes associated with rs12935623[chr16:85339259], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More