EnhancerDB
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Enhancers that have rs12950246[chr17:40557691]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 40556065 40574459 enh17161
Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12950246[chr17:40557691]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 40546814 40566881 ZNF274 GTRD no Blood (GM12878) 108260637
chr17 40546874 40564174 ZBTB33 GTRD no Lung (A549) 108260638
chr17 40546896 40561581 ZBTB33 GTRD no Lung (A549) 108260639
chr17 40546905 40566597 ZNF274 GTRD no Blood (GM12878) 108260640
chr17 40546941 40565998 ZNF274 GTRD no Blood (GM12878) 108260641
chr17 40546985 40566407 ZNF274 GTRD no Blood (GM12878) 108260642
chr17 40556124 40562016 ZBTB33 GTRD no Lung (A549) 108260643
chr17 40557342 40566842 ZNF274 GTRD no Blood (GM12878) 108260644
chr17 40557674 40557695 IRF1 JASPAR yes 54301941
chr17 40557676 40557691 PRDM1 JASPAR yes 54301942
chr17 40557678 40557699 IRF1 JASPAR yes 54301943
chr17 40557679 40557700 ZNF263 JASPAR yes 54301944
Genes associated with rs12950246[chr17:40557691], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More