EnhancerDB
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  3. rs12953116[chr17:60905831]
Enhancers that have rs12953116[chr17:60905831]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 60893841 60907875 enh17280
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Stomach Placenta Pancreas (Panc1) Muscle (Myoblast) Pancreas Spleen Uterus Thymus Epithelial (MCF-7)
Transcript factors that have rs12953116[chr17:60905831]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 60905389 60905985 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21778280
chr17 60905821 60905831 TEAD1 JASPAR yes 55216309
chr17 60905821 60905831 TEAD4 JASPAR yes 55216310
chr17 60905830 60905844 PAX6 JASPAR yes 55216311
chr17 60905831 60905848 PAX1 JASPAR yes 55216312
chr17 60905831 60905848 PAX9 JASPAR yes 55216313
Genes associated with rs12953116[chr17:60905831], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More