EnhancerDB
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  3. rs12974497[chr19:13963998]
Enhancers that have rs12974497[chr19:13963998]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12974497[chr19:13963998]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13961783 13964126 TCF7L2 GTRD no Colon (HCT116) 21852661
chr19 13961805 13964332 TCF7L2 GTRD no Colon (HCT116) 21852665
chr19 13961822 13964144 TCF7L2 GTRD no Colon (HCT116) 21852666
chr19 13962599 13964143 TCF7L2 GTRD no Colon (HCT116) 21852730
chr19 13962910 13964136 ZNF143 GTRD no Epithelial (MCF-7) 21852732
chr19 13962999 13964156 ZNF274 GTRD no Bone Marrow (K562) 21852734
chr19 13963201 13964202 ZNF143 GTRD no Epithelial (MCF-7) 21852737
chr19 13963315 13964007 TCF7L2 GTRD no Colon (HCT116) 21852738
chr19 13963381 13964133 TCF7L2 GTRD no Colon (HCT116) 21852739
chr19 13963498 13964152 ZNF274 GTRD no Blood (GM12878) 21852741
chr19 13963526 13964025 TCF7L2 GTRD no Colon (HCT116) 21852742
chr19 13963572 13964189 TCF7L2 GTRD no Colon (HCT116) 21852743
chr19 13963597 13964254 ZNF274 GTRD no Blood (GM12878) 21852744
chr19 13963771 13964196 ZNF274 GTRD no Blood (GM12878) 21852746
chr19 13963836 13964073 ZNF274 GTRD no Blood (GM12878) 21852747
chr19 13963859 13964181 ZNF274 GTRD no Blood (GM12878) 21852748
chr19 13963903 13964257 ZNF274 GTRD no Blood (GM12878) 21852749
chr19 13963994 13964006 ZBTB7B JASPAR yes 112538777
chr19 13963994 13964006 ZBTB7C JASPAR yes 112538778
Genes associated with rs12974497[chr19:13963998], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More